James Nokes

Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro.Nyagwange J Kutima B Mwai K Karanja HK Gitonga JN Mugo D Sein Y Wright D Omuoyo DO Nyiro JU Tuju J Nokes DJ Agweyu A Bejon P Ochola-Oyier LI Scott JAG Lambe T Nduati E Agoti C Warimwe GM
Int J Infect Dis, (2023). 127:11-16

Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal Kenya.Wambua J Munywoki PK Coletti P Nyawanda BO Murunga N Nokes DJ Hens N
PLoS One, (2022). 17:e0278066

Identifying the research, advocacy, policy and implementation needs for the prevention and management of respiratory syncytial virus lower respiratory tract infection in low- and middle-income countries.Carbonell-Estrany X Simoes EAF Bont LJ Gentile A Homaira N Scotta MC Stein RT Torres JP Sheikh J Broor S Khuri-Bulos N Nokes DJ Munywoki PK Bassat Q Sharma AK Basnet S Garba M De Jesus-Cornejo J Lupisan SP Nunes MC Divarathna M Fullarton JR Rodgers-Gray BS Keary I Renosa MDC Verwey C Moore DP Noordeen F Kabra S do Vale MS Paternina-De La Ossa R Marino C Figueras-Aloy J Krilov L Berezin E Zar HJ Paudel K Safadi MAP Dbaibo G Jroundi I Jha R Rafeek RAM Pinheiro RS Bracht M Muthugala R Lanari M Martinon-Torres F Mitchell I Irimu G Pandey A Krishnan A Mejias A da Costa MSC Shrestha S Pernica JM de Carvalho FC Jalango RE Ibrahim H Ewa A Ensinck G Ulloa-Gutierrez R Miralha AL Lucion MF Hassan MZ Akhtar Z Aleem MA Chowdhury F Rojo P Sande C Musau A Zaman K Helena L Arlant F Ghimire P Price A Subedi KU Brenes-Chacon H Goswami DR Rahman MZ Hossain ME Chisti MJ Vain NE Lim A Chiu A Papenburg J Juarez MDV Senaratne T Arunasalam S Strand TA Ayuk A Ogunrinde O Tavares LVS Garba C Garba BI Dawa J Gordon M Osoro E Agoti CN Nyawanda B Ngama M Tabu C Mathew JL Cornacchia A Rai GK Jain A Giongo MS Paes BA
Front Pediatr, (2022). 10:1033125

Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data.Ojal J Brand SPC Were V Okiro EA Kombe IK Mburu C Aziza R Ogero M Agweyu A Warimwe GM Uyoga S Adetifa IMO Scott JAG Otieno E Ochola-Oyier LI Agoti CN Kasera K Amoth P Mwangangi M Aman R Ng'ang'a W Tsofa B Bejon P Barasa E Keeling MJ Nokes DJ
Wellcome Open Res, (2022). 6:127

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.Tegally H San JE Cotten M Moir M Tegomoh B Mboowa G Martin DP Baxter C Lambisia AW Diallo A Amoako DG Diagne MM Sisay A Zekri AN Gueye AS Sangare AK Ouedraogo AS Sow A Musa AO Sesay AK Abias AG Elzagheid AI Lagare A Kemi AS Abar AE Johnson AA Fowotade A Oluwapelumi AO Amuri AA Juru A Kandeil A Mostafa A Rebai A Sayed A Kazeem A Balde A Christoffels A Trotter AJ Campbell A Keita AK Kone A Bouzid A Souissi A Agweyu A Naguib A Gutierrez AV Nkeshimana A Page AJ Yadouleton A Vinze A Happi AN Chouikha A Iranzadeh A Maharaj A Batchi-Bouyou AL Ismail A Sylverken AA Goba A Femi A Sijuwola AE Marycelin B Salako BL Oderinde BS Bolajoko B Diarra B Herring BL Tsofa B Lekana-Douki B Mvula B Njanpop-Lafourcade BM Marondera BT Khaireh BA Kouriba B Adu B Pool B McInnis B Brook C Williamson C Nduwimana C Anscombe C Pratt CB Scheepers C Akoua-Koffi CG Agoti CN Mapanguy CM Loucoubar C Onwuamah CK Ihekweazu C Malaka CN Peyrefitte C Grace C Omoruyi CE Rafai CD Morang'a CM Erameh C Lule DB Bridges DJ Mukadi-Bamuleka D Park D Rasmussen DA Baker D Nokes DJ Ssemwanga D Tshiabuila D Amuzu DSY Goedhals D Grant DS Omuoyo DO Maruapula D Wanjohi DW Foster-Nyarko E Lusamaki EK Simulundu E Ong'era EM Ngabana EN Abworo EO Otieno E Shumba E Barasa E Ahmed EB Ahmed EA Lokilo E Mukantwari E Philomena E Belarbi E Simon-Loriere E Anoh EA Manuel E Leendertz F Taweh FM Wasfi F Abdelmoula F Takawira FT Derrar F Ajogbasile FV Treurnicht F Onikepe F Ntoumi F Muyembe FM Ragomzingba FEZ Dratibi FA Iyanu FA Mbunsu GK Thilliez G Kay GL Akpede GO van Zyl GU Awandare GA Kpeli GS Schubert G Maphalala GP Ranaivoson HC Omunakwe HE Onywera H Abe H Karray H Nansumba H Triki H Kadjo HAA Elgahzaly H Gumbo H Mathieu H Kavunga-Membo H Smeti I Olawoye IB Adetifa IMO Odia I Ben Boubaker IB Muhammad IA Ssewanyana I Wurie I Konstantinus IS Halatoko JWA Ayei J Sonoo J Makangara JC Tamfum JM Heraud JM Shaffer JG Giandhari J Musyoki J Nkurunziza J Uwanibe JN Bhiman JN Yasuda J Morais J Kiconco J Sandi JD Huddleston J Odoom JK Morobe JM Gyapong JO Kayiwa JT Okolie JC Xavier JS Gyamfi J Wamala JF Bonney JHK Nyandwi J Everatt J Nakaseegu J Ngoi JM Namulondo J Oguzie JU Andeko JC Lutwama JJ Mogga JJH O'Grady J Siddle KJ Victoir K Adeyemi KT Tumedi KA Carvalho KS Mohammed KS Dellagi K Musonda KG Duedu KO Fki-Berrajah L Singh L Kepler LM Biscornet L de Oliveira Martins L Chabuka L Olubayo L Ojok LD Deng LL Ochola-Oyier LI Tyers L Mine M Ramuth M Mastouri M ElHefnawi M Mbanne M Matsheka MI Kebabonye M Diop M Momoh M Lima Mendonca MDL Venter M Paye MF Faye M Nyaga MM Mareka M Damaris MM Mburu MW Mpina MG Owusu M Wiley MR Tatfeng MY Ayekaba MO Abouelhoda M Beloufa MA Seadawy MG Khalifa MK Matobo MM Kane M Salou M Mbulawa MB Mwenda M Allam M Phan MVT Abid N Rujeni N Abuzaid N Ismael N Elguindy N Top NM Dia N Mabunda N Hsiao NY Silochi NB Francisco NM Saasa N Bbosa N Murunga N Gumede N Wolter N Sitharam N Ndodo N Ajayi NA Tordo N Mbhele N Razanajatovo NH Iguosadolo N Mba N Kingsley OC Sylvanus O Femi O Adewumi OM Testimony O Ogunsanya OA Fakayode O Ogah OE Oludayo OE Faye O Smith-Lawrence P Ondoa P Combe P Nabisubi P Semanda P Oluniyi PE Arnaldo P Quashie PK Okokhere PO Bejon P Dussart P Bester PA Mbala PK Kaleebu P Abechi P El-Shesheny R Joseph R Aziz RK Essomba RG Ayivor-Djanie R Njouom R Phillips RO Gorman R Kingsley RA Neto Rodrigues Rmdesa Audu RA Carr RAA Gargouri S Masmoudi S Bootsma S Sankhe S Mohamed SI Femi S Mhalla S Hosch S Kassim SK Metha S Trabelsi S Agwa SH Mwangi SW Doumbia S Makiala-Mandanda S Aryeetey S Ahmed SS Ahmed SM Elhamoumi S Moyo S Lutucuta S Gaseitsiwe S Jalloh S Andriamandimby SF Oguntope S Grayo S Lekana-Douki S Prosolek S Ouangraoua S van Wyk S Schaffner SF Kanyerezi S Ahuka-Mundeke S Rudder S Pillay S Nabadda S Behillil S Budiaki SL van der Werf S Mashe T Mohale T Le-Viet T Velavan TP Schindler T Maponga TG Bedford T Anyaneji UJ Chinedu U Ramphal U George UE Enouf V Nene V Gorova V Roshdy WH Karim WA Ampofo WK Preiser W Choga WT Ahmed YA Ramphal Y Bediako Y Naidoo Y Butera Y de Laurent ZR Africa Pathogen Genomics Initiative double dagger Ouma AEO von Gottberg A Githinji G Moeti M Tomori O Sabeti PC Sall AA Oyola SO Tebeje YK Tessema SK de Oliveira T Happi C Lessells R Nkengasong J Wilkinson E
Science, (2022). 378:eabq5358

A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic.Hilton J Riley H Pellis L Aziza R Brand SPC KKombe I Ojal J Parisi A Keeling MJ Nokes DJ Manson-Sawko R House T
PLoS Comput Biol, (2022). 18:e1010390

Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya.Agoti CN Curran MD Murunga N Ngari M Muthumbi E Lambisia AW Frost SDW Blacklaws BA Nokes DJ Drumright LN
Gut Pathog, (2022). 14:32

Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya.Orangi S Ojal J Brand SP Orlendo C Kairu A Aziza R Ogero M Agweyu A Warimwe GM Uyoga S Otieno E Ochola-Oyier LI Agoti CN Kasera K Amoth P Mwangangi M Aman R Ng'ang'a W Adetifa IM Scott JAG Bejon P Keeling MJ Flasche S Nokes DJ Barasa E
BMJ Glob Health, (2022). 7:

Genomic Epidemiology of SARS-CoV-2 in Seychelles, 2020-2021.Morobe JM Pool B Marie L Didon D Lambisia AW Makori T Mohammed KS de Laurent ZR Ndwiga L Mburu MW Moraa E Murunga N Musyoki J Mwacharo J Nyamako L Riako D Ephnatus P Gambo F Naimani J Namulondo J Tembo SZ Ogendi E Balde T Dratibi FA Yahaya AA Gumede N Achilla RA Borus PK Wanjohi DW Tessema SK Mwangangi J Bejon P Nokes DJ Ochola-Oyier LI Githinji G Biscornet L Agoti CN
Viruses, (2022). 14:

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study.Agoti CN Ochola-Oyier LI Dellicour S Mohammed KS Lambisia AW de Laurent ZR Morobe JM Mburu MW Omuoyo DO Ongera EM Ndwiga L Maitha E Kitole B Suleiman T Mwakinangu M Nyambu JK Otieno J Salim B Musyoki J Murunga N Otieno E Kiiru JN Kasera K Amoth P Mwangangi M Aman R Kinyanjui S Warimwe G Phan M Agweyu A Cotten M Barasa E Tsofa B Nokes DJ Bejon P Githinji G
Elife, (2022). 11:

Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019: a systematic analysis.Li Y Wang X Blau DM Caballero MT Feikin DR Gill CJ Madhi SA Omer SB Simoes EAF Campbell H Pariente AB Bardach D Bassat Q Casalegno JS Chakhunashvili G Crawford N Danilenko D Do LAH Echavarria M Gentile A Gordon A Heikkinen T Huang QS Jullien S Krishnan A Lopez EL Markic J Mira-Iglesias A Moore HC Moyes J Mwananyanda L Nokes DJ Noordeen F Obodai E Palani N Romero C Salimi V Satav A Seo E Shchomak Z Singleton R Stolyarov K Stoszek SK von Gottberg A Wurzel D Yoshida LM Yung CF Zar HJ Respiratory Virus Global Epidemiology Network Nair H Resceu investigators
Lancet, (2022). 399:2047-2064

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya.Nyagwange J Ndwiga L Muteru K Wamae K Tuju J Testing Team C Kutima B Gitonga J Karanja H Mugo D Kasera K Amoth P Murunga N Babu L Otieno E Githinji G Nokes DJ Tsofa B Orindi B Barasa E Warimwe G Agoti CN Bejon P Ochola-Oyier LI
Wellcome Open Res, (2022). 7:69

Efficiency of transplacental transfer of respiratory syncytial virus (RSV) specific antibodies among pregnant women in Kenya.Nyiro JU Bukusi E Mwaengo D Nyaguara A Nyawanda B Otieno N Bigogo G Murunga N Widdowson MA Verani JR Chaves SS Mwangudza H Odundo C Berkley JA Nokes DJ Munywoki PK
Wellcome Open Res, (2022). 7:43

Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol.Lambisia AW Mohammed KS Makori TO Ndwiga L Mburu MW Morobe JM Moraa EO Musyoki J Murunga N Mwangi JN Nokes DJ Agoti CN Ochola-Oyier LI Githinji G
Front Med (Lausanne), (2022). 9:836728

Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya.Phan MVT Agoti CN Munywoki PK Otieno GP Ngama M Kellam P Cotten M Nokes DJ
Sci Rep, (2022). 12:202

Spatial-temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype.Wangui J Nokes DJ Mobegi VA Otieno JR Agoti CN Ngeranwa JJN Bulimo WD
Influenza Other Respir Viruses, (2022). 16:501-510

Seroprevalence of Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2 Among Healthcare Workers in Kenya.Etyang AO Lucinde R Karanja H Kalu C Mugo D Nyagwange J Gitonga J Tuju J Wanjiku P Karani A Mutua S Maroko H Nzomo E Maitha E Kamuri E Kaugiria T Weru J Ochola LB Kilimo N Charo S Emukule N Moracha W Mukabi D Okuku R Ogutu M Angujo B Otiende M Bottomley C Otieno E Ndwiga L Nyaguara A Voller S Agoti CN Nokes DJ Ochola-Oyier LI Aman R Amoth P Mwangangi M Kasera K Ng'ang'a W Adetifa IMO Wangeci Kagucia E Gallagher K Uyoga S Tsofa B Barasa E Bejon P Scott JAG Agweyu A Warimwe GM
Clin Infect Dis, (2022). 74:288-293

Individual's daily behaviour and intergenerational mixing in different social contexts of Kenya.Del Fava E Adema I Kiti MC Poletti P Merler S Nokes DJ Manfredi P Melegaro A
Sci Rep, (2021). 11:21589

Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels.Bottomley C Otiende M Uyoga S Gallagher K Kagucia EW Etyang AO Mugo D Gitonga J Karanja H Nyagwange J Adetifa IMO Agweyu A Nokes DJ Warimwe GM Scott JAG
Nat Commun, (2021). 12:6196

Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018.Owuor DC de Laurent ZR Kikwai GK Mayieka LM Ochieng M Muller NF Otieno NA Emukule GO Hunsperger EA Garten R Barnes JR Chaves SS Nokes DJ Agoti CN
Viruses, (2021). 13: