Publications

Epidemiology and Demography

Population-Based Estimate of Melioidosis, Kenya.Muthumbi EM, Gordon NC, Mochamah G, Nyongesa S, Odipo E, Mwarumba S, Mturi N, Etyang AO, Dance DAB, Scott JAG, Morpeth SC
Emerg Infect Dis, (2019). 25:984-987

Effect of ten-valent pneumococcal conjugate vaccine on invasive pneumococcal disease and nasopharyngeal carriage in Kenya: a longitudinal surveillance study.Hammitt LL, Etyang AO, Morpeth SC, Ojal J, Mutuku A, Mturi N, Moisi JC, Adetifa IM, Karani A, Akech DO, Otiende M, Bwanaali T, Wafula J, Mataza C, Mumbo E, Tabu C, Knoll MD, Bauni E, Marsh K, Williams TN, Kamau T, Sharif SK, Levine OS, Scott JAG
Lancet, (2019). 393:2146-2154

Sustaining pneumococcal vaccination after transitioning from Gavi support: a modelling and cost-effectiveness study in Kenya.Ojal J, Griffiths U, Hammitt LL, Adetifa I, Akech D, Tabu C, Scott JAG, Flasche S
Lancet Glob Health, (2019). 7:e644-e654

Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya.Nyiro JU, Kiyuka PK, Mutunga MN, Sande CJ, Munywoki PK, Scott JAG, Nokes DJ
Wellcome Open Res, (2019). 4:33

Effect of Previous Exposure to Malaria on Blood Pressure in Kilifi, Kenya: A Mendelian Randomization Study.Etyang AO, Kapesa S, Odipo E, Bauni E, Kyobutungi C, Abdalla M, Muntner P, Musani SK, Macharia A, Williams TN, Cruickshank JK, Smeeth L, Scott JAG
J Am Heart Assoc, (2019). 8:e011771

Haematological quality and age of donor blood issued for paediatric transfusion to four hospitals in sub-Saharan Africa.Uyoga S, Mpoya A, Olupot-Olupot P, Kiguli S, Opoka RO, Engoru C, Mallewa M, Kennedy N, M'Baya B, Kyeyune D, Wabwire B, Bates I, Gibb DM, Walker AS, George EC, Williams TN, Maitland K
Vox Sang, (2019). 114:340-348

Effect of enhancing audit and feedback on uptake of childhood pneumonia treatment policy in hospitals that are part of a clinical network: a cluster randomized trial.Ayieko P, Irimu G, Ogero M, Mwaniki P, Malla L, Julius T, Chepkirui M, Mbevi G, Oliwa J, Agweyu A, Akech S, Were F, English M, Clinical Information Network Authors
Implement Sci, (2019). 14:20

Carriage and Acquisition of Extended-spectrum beta-Lactamase-producing Enterobacterales Among Neonates Admitted to Hospital in Kilifi, Kenya.Kagia N, Kosgei P, Ooko M, Wafula L, Mturi N, Anampiu K, Mwarumba S, Njuguna P, Seale AC, Berkley JA, Bottomley C, Scott JAG, Morpeth SC
Clin Infect Dis, (2019). 69:751-759

The indirect health effects of malaria estimated from health advantages of the sickle cell trait.Uyoga S, Macharia AW, Ndila CM, Nyutu G, Shebe M, Awuondo KO, Mturi N, Peshu N, Tsofa B, Scott JAG, Maitland K, Williams TN
Nat Commun, (2019). 10:856

Effect of 10-valent pneumococcal conjugate vaccine on the incidence of radiologically-confirmed pneumonia and clinically-defined pneumonia in Kenyan children: an interrupted time-series analysis.Silaba M, Ooko M, Bottomley C, Sande J, Benamore R, Park K, Ignas J, Maitland K, Mturi N, Makumi A, Otiende M, Kagwanja S, Safari S, Ochola V, Bwanaali T, Bauni E, Gleeson F, Deloria Knoll M, Adetifa I, Marsh K, Williams TN, Kamau T, Sharif S, Levine OS, Hammitt LL, Scott JAG
Lancet Glob Health, (2019). 7:e337-e346

Patient costs of hypertension care in public health care facilities in Kenya.Oyando R, Njoroge M, Nguhiu P, Kirui F, Mbui J, Sigilai A, Bukania Z, Obala A, Munge K, Etyang A, Barasa E
Int J Health Plann Manage, (2019). 34:e1166-e1178

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM
Microbiol Resour Announc, (2019). 8:

Model-based estimates of transmission of respiratory syncytial virus within households.Kombe IK, Munywoki PK, Baguelin M, Nokes DJ, Medley GF
Epidemics, (2019). 27:1-11

An Intensive, Active Surveillance Reveals Continuous Invasion and High Diversity of Rhinovirus in Households.Kamau E, Onyango CO, Otieno GP, Kiyuka PK, Agoti CN, Medley GF, Cane PA, Nokes DJ, Munywoki PK
J Infect Dis, (2019). 219:1049-1057

Hydroxyurea for Children with Sickle Cell Anemia in Sub-Saharan Africa.Tshilolo L, Tomlinson G, Williams TN, Santos B, Olupot-Olupot P, Lane A, Aygun B, Stuber SE, Latham TS, McGann PT, Ware RE, REACH Investigators
N Engl J Med, (2019). 380:121-131

Health disparities across the counties of Kenya and implications for policy makers, 1990-2016: a systematic analysis for the Global Burden of Disease Study 2016.Achoki T, Miller-Petrie MK, Glenn SD, Kalra N, Lesego A, Gathecha GK, Alam U, Kiarie HW, Maina IW, Adetifa IMO, Barsosio HC, Degfie TT, Keiyoro PN, Kiirithio DN, Kinfu Y, Kinyoki DK, Kisia JM, Krish VS, Lagat AK, Mooney MD, Moturi WN, Newton CRJ, Ngunjiri JW, Nixon MR, Soti DO, Van De Vijver S, Yonga G, Hay SI, Murray CJL, Naghavi M
Lancet Glob Health, (2019). 7:e81-e95

The population dynamics of hemoglobins A, A2, F and S in the context of the hemoglobinopathies HbS and alpha-thalassemia in Kenyan infants.Macharia AW, Uyoga S, Ndila C, Nyutu G, Makale J, Tendwa M, Nyatichi E, Ojal J, Atkinson S, Williams TN
Haematologica, (2019). 104:e184-e186

Iron Status and Associated Malaria Risk Among African Children.Muriuki JM, Mentzer AJ, Kimita W, Ndungu FM, Macharia AW, Webb EL, Lule SA, Morovat A, Hill AVS, Bejon P, Elliott AM, Williams TN, Atkinson SH
Clin Infect Dis, (2019). 68:1807-1814

Analysing Interrupted Time Series with a Control..Bottomley C, Scott JAG, Isham V
Epidemiologic Methods, (2019). 8:DOI: https://doi.org/10.1515/em-2018-0010

Journal of Open Source Software (JOSS): design and first-year review.Smith AM, Niemeyer KE, Katz DS, Barba LA, Githinji G, Gymrek M, Huff KD, Madan CR, Mayes AC, Moerman KM, Prins P, Ram K, Rokem A, Teal TK, Guimera RV, Vanderplas JT
PeerJ Prepr, (2018). 4:e147