Epidemiology and Demography
Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance.Morobe JM, Nyiro JU, Brand S, Kamau E, Gicheru E, Eyase F, Otieno GP, Munywoki PK, Agoti CN, Nokes DJ
Wellcome Open Res, (2018). 3:128
Evaluating the performance of tools used to call minority variants from whole genome short-read data.Said Mohammed K, Kibinge N, Prins P, Agoti CN, Cotten M, Nokes DJ, Brand S, Githinji G
Wellcome Open Res, (2018). 3:21
Erratum: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter S, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ
Virus Evol, (2018). 4:vey036
Coverage and timeliness of vaccination and the validity of routine estimates: Insights from a vaccine registry in Kenya.Adetifa IMO, Karia B, Mutuku A, Bwanaali T, Makumi A, Wafula J, Chome M, Mwatsuma P, Bauni E, Hammitt LL, Mataza C, Tabu C, Kamau T, Williams TN, Scott JAG
Vaccine, (2018). 36:7965-7974
Modifying Intestinal Integrity and Micro Biome in Severe Malnutrition with Legume-Based Feeds (MIMBLE 2.0): protocol for a phase II refined feed and intervention trial.Walsh K, Calder N, Olupot-Olupot P, Ssenyondo T, Okiror W, Okalebo CB, Muhindo R, Mpoya A, Holmes E, Marchesi J, Delamare de la Villenaise de Chenevarin G, Frost G, Maitland K
Wellcome Open Res, (2018). 3:95
Outpacing the pneumococcus: Antibody dynamics in the first few days following pneumococcal capsular antigen stimulation.Kimaro Mlacha SZ, Warira A, Gatakaa H, Goldblatt D, Scott JAG
Sci Rep, (2018). 8:15376
Antibodies in lymphocyte supernatants can distinguish between neutralising antibodies induced by RSV vaccination and pre-existing antibodies induced by natural infection.Gerretsen HE, Capone S, Vitelli A, Reyes LS, Thompson A, Jones C, Green CA, Pollard AJ, Sande CJ
Vaccine, (2018). 36:6988-6994
How Eliminating Malaria May Also Prevent Iron Deficiency in African Children.Muriuki JM, Atkinson SH
Pharmaceuticals (Basel), (2018). 11:
Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter S, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ
Virus Evol, (2018). 4:vey027
Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics.Sande CJ, Mutunga M, Muteti J, Berkley JA, Nokes DJ, Njunge J
Sci Rep, (2018). 8:13814
Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations.Nyiro JU, Munywoki P, Kamau E, Agoti C, Gichuki A, Etyang T, Otieno G, Nokes DJ
Wellcome Open Res, (2018). 3:89
Reliability and validity of the World Health Organization reading standards for paediatric chest radiographs used in the field in an impact study of Pneumococcal Conjugate Vaccine in Kilifi, Kenya.Ominde M, Sande J, Ooko M, Bottomley C, Benamore R, Park K, Ignas J, Maitland K, Bwanaali T, Gleeson F, Scott A
PLoS One, (2018). 13:e0200715
Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children.Morpeth SC, Munywoki P, Hammitt LL, Bett A, Bottomley C, Onyango CO, Murdoch DR, Nokes DJ, Scott JAG
Sci Rep, (2018). 8:11030
Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study.Ndila CM, Uyoga S, Macharia AW, Nyutu G, Peshu N, Ojal J, Shebe M, Awuondo KO, Mturi N, Tsofa B, Sepulveda N, Clark TG, Band G, Clarke G, Rowlands K, Hubbart C, Jeffreys A, Kariuki S, Marsh K, Mackinnon M, Maitland K, Kwiatkowski DP, Rockett KA, Williams TN, Malaria GENConsortium
Lancet Haematol, (2018). 5:e333-e345
Risk factors for mortality and effect of correct fluid prescription in children with diarrhoea and dehydration without severe acute malnutrition admitted to Kenyan hospitals: an observational, association study.Akech S, Ayieko P, Gathara D, Agweyu A, Irimu G, Stepniewska K, English M, Clinical Information Network authors
Lancet Child Adolesc Health, (2018). 2:516-524
Caregiver oral rehydration solution fluid monitoring charts versus standard care for the management of some dehydration among Kenyan children: a randomized controlled trial.Kailemia M, Kariuki N, Laving A, Agweyu A, Wamalwa D
Int Health, (2018). 10:442-450
Prevalence, outcome and quality of care among children hospitalized with severe acute malnutrition in Kenyan hospitals: A multi-site observational study.Gachau S, Irimu G, Ayieko P, Akech S, Agweyu A, English M, Clinical Information Network Author Group
PLoS One, (2018). 13:e0197607
Publisher Correction: Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses.Okoi C, Anderson STB, Antonio M, Mulwa SN, Gehre F, Adetifa IMO
Sci Rep, (2018). 8:7771
Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya.Kiyuka PK, Agoti CN, Munywoki PK, Njeru R, Bett A, Otieno JR, Otieno GP, Kamau E, Clark TG, van der Hoek L, Kellam P, Nokes DJ, Cotten M
J Infect Dis, (2018). 217:1728-1739
Author Correction: Bacteriological diagnosis of childhood TB: a prospective observational study.Brent AJ, Mugo D, Musyimi R, Mutiso A, Morpeth SC, Levin M, Scott JAG
Sci Rep, (2018). 8:7223
