Publications

Epidemiology and Demography

Trends in procurement costs for HIV commodities: a 7-year retrospective analysis of global fund data across 125 countries.Wafula, F. Agweyu, A. Macintyre, K.
J Acquir Immune Defic Syndr, (2014). 65:e134-9

The burden and consequences of inherited blood disorders among young children in western Kenya.Suchdev, P. S. Ruth, L. J. Earley, M. Macharia, A. Williams, T. N.
Matern Child Nutr, (2014). 10:135-44

Regional and temporal trends in malaria commodity costs: an analysis of Global Fund data for 79 countries.Wafula, F. Agweyu, A. Macintyre, K.
Malar J, (2013). 12:466

Correction: Changing Use of Surgical Antibiotic Prophylaxis in Thika Hospital, Kenya: A Quality Improvement Intervention with an Interrupted Time Series Design.Aiken, A. M. Wanyoro, A. K. Mwangi, J. Juma, F. Mugoya, I. K. Scott, J. A.
PLoS One, (2013). 8:

Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group.Satzke, C. Turner, P. Virolainen-Julkunen, A. Adrian, P. V. Antonio, M. Hare, K. M. Henao-Restrepo, A. M. Leach, A. J. Klugman, K. P. Porter, B. D. Sa-Leao, R. Scott, J. A. Nohynek, H. O'Brien, K. L. W. H. O. Pneumococcal Carriage Working Group
Vaccine, (2013). 32:165-79

Population genetic structure of Streptococcus pneumoniae in Kilifi, Kenya, prior to the introduction of pneumococcal conjugate vaccine.Brueggemann, A. B. Muroki, B. M. Kulohoma, B. W. Karani, A. Wanjiru, E. Morpeth, S. Kamau, T. Sharif, S. Scott, J. A.
PLoS One, (2013). 8:e81539

Changing use of surgical antibiotic prophylaxis in Thika Hospital, Kenya: a quality improvement intervention with an interrupted time series design.Aiken, A. M. Wanyoro, A. K. Mwangi, J. Juma, F. Mugoya, I. K. Scott, J. A.
PLoS One, (2013). 8:e78942

Spatial distribution of G6PD deficiency variants across malaria-endemic regions.Howes, R. E. Dewi, M. Piel, F. B. Monteiro, W. M. Battle, K. E. Messina, J. P. Sakuntabhai, A. Satyagraha, A. W. Williams, T. N. Baird, J. K. Hay, S. I.
Malar J, (2013). 12:418

Consulting communities on feedback of genetic findings in international health research: sharing sickle cell disease and carrier information in coastal Kenya.Marsh, V. Kombe, F. Fitzpatrick, R. Williams, T. N. Parker, M. Molyneux, S.
BMC Med Ethics, (2013). 14:41

Human SNP links differential outcomes in inflammatory and infectious disease to a FOXO3-regulated pathway.Lee, J. C. Espeli, M. Anderson, C. A. Linterman, M. A. Pocock, J. M. Williams, N. J. Roberts, R. Viatte, S. Fu, B. Peshu, N. Hien, T. T. Phu, N. H. Wesley, E. Edwards, C. Ahmad, T. Mansfield, J. C. Gearry, R. Dunstan, S. Williams, T. N. Barton, A. Vinuesa, C. G. Uk Ibd Genetics Consortium Parkes, M. Lyons, P. A. Smith, K. G.
Cell, (2013). 155:57-69

Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort.Sande, C. J. Mutunga, M. N. Okiro, E. A. Medley, G. F. Cane, P. A. Nokes, D. J.
J Med Virol, (2013). 85:2020-5

Global burden of sickle cell anaemia in children under five, 2010-2050: modelling based on demographics, excess mortality, and interventions.Piel, F. B. Hay, S. I. Gupta, S. Weatherall, D. J. Williams, T. N.
PLoS Med, (2013). 10:e1001484

Assessment of health benefits and cost-effectiveness of 10-valent and 13-valent pneumococcal conjugate vaccination in Kenyan children.Ayieko, P. Griffiths, U. K. Ndiritu, M. Moisi, J. Mugoya, I. K. Kamau, T. English, M. Scott, J. A.
PLoS One, (2013). 8:e67324

Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya.Agoti, C. N. Gitahi, C. W. Medley, G. F. Cane, P. A. Nokes, D. J.
Influenza Other Respir Viruses, (2013). 7:1008-12

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells.Kimaro Mlacha, S. Z. Romero-Steiner, S. Hotopp, J. C. Kumar, N. Ishmael, N. Riley, D. R. Farooq, U. Creasy, T. H. Tallon, L. J. Liu, X. Goldsmith, C. S. Sampson, J. Carlone, G. M. Hollingshead, S. K. Scott, J. A. Tettelin, H.
BMC Genomics, (2013). 14:383

Incidence of convulsive epilepsy in a rural area in Kenya.Ngugi, A. K. Bottomley, C. Scott, J. A. Mung'ala-Odera, V. Bauni, E. Sander, J. W. Kleinschmidt, I. Newton, C. R.
Epilepsia, (2013). 54:1352-9

Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection.Kimaro Mlacha, S. Z. Peret, T. C. Kumar, N. Romero-Steiner, S. Dunning Hotopp, J. C. Ishmael, N. Grinblat-Huse, V. Riley, D. R. Erdman, D. D. Carlone, G. M. Sampson, J. Scott, J. A. Tettelin, H.
BMC Genomics, (2013). 14:378

Imputation-based meta-analysis of severe malaria in three African populations.Band, G. Le, Q. S. Jostins, L. Pirinen, M. Kivinen, K. Jallow, M. Sisay-Joof, F. Bojang, K. Pinder, M. Sirugo, G. Conway, D. J. Nyirongo, V. Kachala, D. Molyneux, M. Taylor, T. Ndila, C. Peshu, N. Marsh, K. Williams, T. N. Alcock, D. Andrews, R. Edkins, S. Gray, E. Hubbart, C. Jeffreys, A. Rowlands, K. Schuldt, K. Clark, T. G. Small, K. S. Teo, Y. Y. Kwiatkowski, D. P. Rockett, K. A. Barrett, J. C. Spencer, C. C. Malaria Genomic Epidemiology, Network
PLoS Genet, (2013). 9:e1003509

Management of severe malaria: results from recent trials.Olupot-Olupot, P. Maitland, K.
Adv Exp Med Biol, (2013). 764:241-50

The genetic risk of acute seizures in African children with falciparum malaria.Kariuki, S. M. Rockett, K. Clark, T. G. Reyburn, H. Agbenyega, T. Taylor, T. E. Birbeck, G. L. Williams, T. N. Newton, C. R.
Epilepsia, (2013). 54:990-1001