James Nokes

Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya.Otieno GP Murunga N Agoti CN Gallagher KE Awori JO Nokes DJ
Wellcome Open Res, (2020). 5:150

Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya.Mweu MM Murunga N Otieno JW Nokes DJ
Wellcome Open Res, (2020). 5:155

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17.Kamau E Otieno JR Murunga N Oketch JW Ngoi JM de Laurent ZR Mwema A Nyiro JU Agoti CN Nokes DJ
Virus Evol, (2020). 6:veaa050

Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.Mwanga MJ Owor BE Ochieng JB Ngama MH Ogwel B Onyango C Juma J Njeru R Gicheru E Otieno GP Khagayi S Agoti CN Bigogo GM Omore R Addo OY Mapaseka S Tate JE Parashar UD Hunsperger E Verani JR Breiman RF Nokes DJ
BMC Infect Dis, (2020). 20:504

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.Abidha CA Nyiro J Kamau E Abdullahi O Nokes DJ Agoti CN
Virus Evol, (2020). 6:veaa031

Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households.Brand SP Munywoki P Walumbe D Keeling MJ Nokes DJ
Elife, (2020). 9:

Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting.Kinyanjui T Pan-Ngum W Saralamba S Taylor S White L Nokes DJ
Vaccine X, (2020). 4:100055

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau E Oketch JW de Laurent ZR Phan MVT Agoti CN Nokes DJ Cotten M
BMC Genomics, (2020). 21:83

Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017.Owuor DC Ngoi JM Otieno JR Otieno GP Nyasimi FM Nyiro JU Agoti CN Chaves SS Nokes DJ
Influenza Other Respir Viruses, (2020). 14:320-330

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau E Oketch JW de Laurent ZR Phan MVT Agoti CN Nokes DJ Cotten M
BMC Genomics, (2020). 21:5

Impact of the Introduction of Rotavirus Vaccine on Hospital Admissions for Diarrhea Among Children in Kenya: A Controlled Interrupted Time-Series Analysis.Otieno GP Bottomley C Khagayi S Adetifa I Ngama M Omore R Ogwel B Owor BE Bigogo G Ochieng JB Onyango C Juma J Mwenda J Tabu C Tate JE Addo Y Britton T Parashar UD Breiman RF Verani JR Nokes DJ
Clin Infect Dis, (2020). 70:2306-2313

Effectiveness of Monovalent Rotavirus Vaccine Against Hospitalization With Acute Rotavirus Gastroenteritis in Kenyan Children.Khagayi S Omore R Otieno GP Ogwel B Ochieng JB Juma J Apondi E Bigogo G Onyango C Ngama M Njeru R Owor BE Mwanga MJ Addo Y Tabu C Amwayi A Mwenda JM Tate JE Parashar UD Breiman RF Nokes DJ Verani JR
Clin Infect Dis, (2020). 70:2298-2305

Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya.Kamau E Luka MM de Laurent ZR Adema I Agoti CN Nokes DJ
Microbiol Resour Announc, (2019). 8:

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors.Kiti MC Melegaro A Cattuto C Nokes DJ
Wellcome Open Res, (2019). 4:84

Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016.Oketch JW Kamau E Otieno GP Otieno JR Agoti CN Nokes DJ
BMC Infect Dis, (2019). 19:757

Author Correction: Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande CJ Njunge JM Ngoi JM Mutunga MN Chege T Gicheru ET Gardiner EM Gwela A Green CA Drysdale SB Berkley JA Nokes DJ Pollard AJ
Nat Commun, (2019). 10:3291

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.Agoti CN Phan MVT Munywoki PK Githinji G Medley GF Cane PA Kellam P Cotten M Nokes DJ
Sci Rep, (2019). 9:10076

Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande CJ Njunge JM Mwongeli Ngoi J Mutunga MN Chege T Gicheru ET Gardiner EM Gwela A Green CA Drysdale SB Berkley JA Nokes DJ Pollard AJ
Nat Commun, (2019). 10:2218

Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya.Nyiro JU Kiyuka PK Mutunga MN Sande CJ Munywoki PK Scott JAG Nokes DJ
Wellcome Open Res, (2019). 4:33

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.Kamau E Agoti CN Ngoi JM de Laurent ZR Gitonga J Cotten M Phan MVT Nokes DJ Delwart E Sanders E Warimwe GM
Microbiol Resour Announc, (2019). 8: