Agoti CN

Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013.Owor BE, Mwanga MJ, Njeru R, Mugo R, Ngama M, Otieno GP, Nokes DJ, Agoti CN
Wellcome Open Res, (2018). 3:150

Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance.Morobe JM, Nyiro JU, Brand S, Kamau E, Gicheru E, Eyase F, Otieno GP, Munywoki PK, Agoti CN, Nokes DJ
Wellcome Open Res, (2018). 3:128

Evaluating the performance of tools used to call minority variants from whole genome short-read data.Said Mohammed K, Kibinge N, Prins P, Agoti CN, Cotten M, Nokes DJ, Brand S, Githinji G
Wellcome Open Res, (2018). 3:21

Erratum: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter S, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ
Virus Evol, (2018). 4:vey036

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR, Kamau EM, Oketch JW, Ngoi JM, Gichuki AM, Binter S, Otieno GP, Ngama M, Agoti CN, Cane PA, Kellam P, Cotten M, Lemey P, Nokes DJ
Virus Evol, (2018). 4:vey027

Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya.Kiyuka PK, Agoti CN, Munywoki PK, Njeru R, Bett A, Otieno JR, Otieno GP, Kamau E, Clark TG, van der Hoek L, Kellam P, Nokes DJ, Cotten M
J Infect Dis, (2018). 217:1728-1739

Continuous Invasion by Respiratory Viruses Observed in Rural Households During a Respiratory Syncytial Virus Seasonal Outbreak in Coastal Kenya.Munywoki PK, Koech DC, Agoti CN, Cane PA, Medley GF, Nokes DJ
Clin Infect Dis, (2018). 67:1559-1567

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotton M, Nokes DJ
Virus Evol, (2017). 3:

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya.Otieno JR, Agoti CN, Gitahi CW, Bett A, Ngama M, Medley GF, Cane PA, Nokes DJ
Virus Evol, (2017). 3:

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ
Virus Evol, (2017). 3:vex006

Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR.Kamau E, Agoti CN, Lewa CS, Oketch J, Owor BE, Otieno GP, Bett A, Cane PA, Nokes DJ
J Clin Virol, (2017). 88:21-25

Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010-2015.Otieno JR, Kamau EM, Agoti CN, Lewa C, Otieno G, Bett A, Ngama M, Cane PA, Nokes DJ
Emerg Infect Dis, (2017). 23:264-271

Human Rhinovirus B and C Genomes from Rural Coastal Kenya.Agoti CN, Kiyuka PK, Kamau E, Munywoki PK, Bett A, van der Hoek L, Kellam P, Nokes DJ, Cotten M
Genome Announc, (2016). 4:

Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11.Owor BE, Masankwa GN, Mwango LC, Njeru RW, Agoti CN, Nokes DJ
BMC Infect Dis, (2016). 16:301

Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya.Otieno JR, Agoti CN, Gitahi CW, Bett A, Ngama M, Medley GF, Cane PA, Nokes DJ
J Virol, (2016). 90:4990-5002

Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence.Agoti CN, Otieno JR, Ngama M, Mwihuri AG, Medley GF, Cane PA, Nokes DJ
J Virol, (2015). 89:11630-42

Frequent Asymptomatic Respiratory Syncytial Virus Infections During an Epidemic in a Rural Kenyan Household Cohort.Munywoki PK, Koech DC, Agoti CN, Bett A, Cane PA, Medley GF, Nokes DJ
J Infect Dis, (2015). 212:1711-8

Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing.Agoti CN, Otieno JR, Munywoki PK, Mwihuri AG, Cane PA, Nokes DJ, Kellam P, Cotten M
J Virol, (2015). 89:3444-54

Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding.Munywoki PK, Koech DC, Agoti CN, Kibirige N, Kipkoech J, Cane PA, Medley GF, Nokes DJ
Epidemiol Infect, (2015). 143:804-12

Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya.Agoti CN, Otieno JR, Gitahi CW, Cane PA, Nokes DJ
Emerg Infect Dis, (2014). 20:950-9