James Nokes/Virus Evol

Emergence and transmission dynamics of the FY.4 Omicron variant in Kenya.Musundi S Mwanga M Lambisia A Morobe JM Murunga N Moraa E Ndwiga L Cheruiyot R Musyoki J Mutunga M Guzman-Rincon LM Sande C Mwangangi J Bejon P Ochola-Oyier LI Nokes DJ Agoti CN Nyiro J Githinji G
Virus Evol, (2025). 11:veaf035

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012-8.Makori TO Bargul JL Lambisia AW Mwanga MJ Murunga N de Laurent ZR Lewa CS Mutunga M Kellam P Cotten M Nokes DJ Phan M Agoti CN
Virus Evol, (2023). 9:vead025

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022).Lambisia AW Makori TO Mutunga M Cheruiyot R Murunga N Quick J Githinji G Nokes DJ Houldcroft CJ Agoti CN
Virus Evol, (2023). 9:vead023

Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season.Nyasimi FM Owuor DC Ngoi JM Mwihuri AG Otieno GP Otieno JR Githinji G Nyiro JU Nokes DJ Agoti CN
Virus Evol, (2020). 6:veaa045

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17.Kamau E Otieno JR Murunga N Oketch JW Ngoi JM de Laurent ZR Mwema A Nyiro JU Agoti CN Nokes DJ
Virus Evol, (2020). 6:veaa050

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.Abidha CA Nyiro J Kamau E Abdullahi O Nokes DJ Agoti CN
Virus Evol, (2020). 6:veaa031

Erratum: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR Kamau EM Oketch JW Ngoi JM Gichuki AM Binter S Otieno GP Ngama M Agoti CN Cane PA Kellam P Cotten M Lemey P Nokes DJ
Virus Evol, (2018). 4:vey036

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno JR Kamau EM Oketch JW Ngoi JM Gichuki AM Binter S Otieno GP Ngama M Agoti CN Cane PA Kellam P Cotten M Lemey P Nokes DJ
Virus Evol, (2018). 4:vey027

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.Githinji G Agoti C Munywoki P Bett A Kellam P Cotton M Nokes DJ
Virus Evol, (2017). 3:

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.Agoti CN Munywoki PK Phan MVT Otieno JR Kamau E Bett A Kombe I Githinji G Medley GF Cane PA Kellam P Cotton M Nokes DJ
Virus Evol, (2017). 3:

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya.Otieno JR Agoti CN Gitahi CW Bett A Ngama M Medley GF Cane PA Nokes DJ
Virus Evol, (2017). 3:

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.Agoti CN Munywoki PK Phan MVT Otieno JR Kamau E Bett A Kombe I Githinji G Medley GF Cane PA Kellam P Cotten M Nokes DJ
Virus Evol, (2017). 3:vex006