George Githinji
53 results
Genomic surveillance of SARS-CoV-2 in Kenya: March 2020-October 2021..Githinji, G.
Lambisia, W. A.
Mohamed, K. S.
Morobe, M. J.
de Laurent, Z. R.
Mburu, W. M.
Ongera, M. E.
Omuoyo, O. D.
Ndwiga, L.
Otieno, E.
Murunga, N.
Musyoki, J.
KWTRP COVID Testing Team.
Kilifi Rapid Response Team.
Kiiru, J.
Kasera, K.
Amoth, P.
Mwangangi, M.
Aman, R.
Kinyanjui, S.
Warimwe, G. M.
Agweyu, A.
Barasa, E.
Tsofa, B.
Mwangangi, J.
Matoke, D.
Nokes, D. J.
Bejon, P.
Ochola-Oyier, L. I.
Agoti, C. N.
1st International Conference on Public Health in Africa (CPHIA-2021), (2021). :
Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season.Nyasimi, F. M.
Owuor, D. C.
Ngoi, J. M.
Mwihuri, A. G.
Otieno, G. P.
Otieno, J. R.
Githinji, G.
Nyiro, J. U.
Nokes, D. J.
Agoti, C. N.
Virus Evol, (2020). 6:veaa045
Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy.Kivisi, C. A.
Muthui, M.
Hunt, M.
Fegan, G.
Otto, T. D.
Githinji, G.
Warimwe, G. M.
Rance, R.
Marsh, K.
Bull, P. C.
Abdi, A. I.
Front Immunol, (2019). 10:2328
Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.Agoti, C. N.
Phan, M. V. T.
Munywoki, P. K.
Githinji, G.
Medley, G. F.
Cane, P. A.
Kellam, P.
Cotten, M.
Nokes, D. J.
Sci Rep, (2019). 9:10076
Scalable Workflows and Reproducible Data Analysis for Genomics.Strozzi, F.
Janssen, R.
Wurmus, R.
Crusoe, M. R.
Githinji, G.
Di Tommaso, P.
Belhachemi, D.
Moller, S.
Smant, G.
de Ligt, J.
Prins, P.
Methods Mol Biol, (2019). 1910:723-745
Journal of Open Source Software (JOSS): design and first-year review.Smith, A. M.
Niemeyer, K. E.
Katz, D. S.
Barba, L. A.
Githinji, G.
Gymrek, M.
Huff, K. D.
Madan, C. R.
Mayes, A. C.
Moerman, K. M.
Prins, P.
Ram, K.
Rokem, A.
Teal, T. K.
Guimera, R. V.
Vanderplas, J. T.
PeerJ Prepr, (2018). 4:e147
Evaluating the performance of tools used to call minority variants from whole genome short-read data.Said Mohammed, K.
Kibinge, N.
Prins, P.
Agoti, C. N.
Cotten, M.
Nokes, D. J.
Brand, S.
Githinji, G.
Wellcome Open Res, (2018). 3:21
A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections.Githinji, G.
Bull, P. C.
Wellcome Open Res, (2017). 2:86
A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.Githinji, G.
Agoti, C.
Munywoki, P.
Bett, A.
Kellam, P.
Cotton, M.
Nokes, D. J.
Virus Evol, (2017). 3:
A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.Agoti, C. N.
Munywoki, P. K.
Phan, M. V. T.
Otieno, J. R.
Kamau, E.
Bett, A.
Kombe, I.
Githinji, G.
Medley, G. F.
Cane, P. A.
Kellam, P.
Cotton, M.
Nokes, D. J.
Virus Evol, (2017). 3:
Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.Agoti, C. N.
Munywoki, P. K.
Phan, M. V. T.
Otieno, J. R.
Kamau, E.
Bett, A.
Kombe, I.
Githinji, G.
Medley, G. F.
Cane, P. A.
Kellam, P.
Cotten, M.
Nokes, D. J.
Virus Evol, (2017). 3:vex006
Prognostic indicators of life-threatening malaria are associated with distinct parasite variant antigen profiles.Warimwe, G. M.
Fegan, G.
Musyoki, J. N.
Newton, C. R.
Opiyo, M.
Githinji, G.
Andisi, C.
Menza, F.
Kitsao, B.
Marsh, K.
Bull, P. C.
Sci Transl Med, (2012). 4:129ra45
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.Bonnal, R. J.
Aerts, J.
Githinji, G.
Goto, N.
MacLean, D.
Miller, C. A.
Mishima, H.
Pagani, M.
Ramirez-Gonzalez, R.
Smant, G.
Strozzi, F.
Syme, R.
Vos, R.
Wennblom, T. J.
Woodcroft, B. J.
Katayama, T.
Prins, P.
Bioinformatics, (2012). 28:1035-7