James Nokes

Cryptosporidium parvum virus 1 genome sequences from pediatric diarrhea cases in coastal Kenya.Agoti CN Njeru R Mwanga M Mutunga M Shah SP Chu TY Nokes DJ Cotten M Phan MVT
Microbiol Resour Announc, (2025). 14:e0034925

Emergence and transmission dynamics of the FY.4 Omicron variant in Kenya.Musundi S Mwanga M Lambisia A Morobe JM Murunga N Moraa E Ndwiga L Cheruiyot R Musyoki J Mutunga M Guzman-Rincon LM Sande C Mwangangi J Bejon P Ochola-Oyier LI Nokes DJ Agoti CN Nyiro J Githinji G
Virus Evol, (2025). 11:veaf035

Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration.Kagucia EW Voller S Ziraba AK Bigogo G Munywoki PK Makobu K Nokes DJ Nyagwange J Orlendo C Akech D Sigilai A Onyango C Juma B Herman-Roloff A Munyua P Apondi C Lidechi S Audi A Ouma A Aol G Misore T Nasimiyu C Onyango D Lo T Kasera K Jalang'o R Kingwara L Adetifa I Etyang AO Warimwe G Agweyu A Scott JAG
Gates Open Res, (2025). 8:60

Prevalence and Predictors of Adverse Birth Outcomes and Their Implications in Assessing the Safety of New Maternal Vaccines in Kenya.Nyiro JU Bukusi E Mureithi MW Walumbe D Nyaguara A Kipkoech C Nyawanda B Bigogo G Otieno N Aol G Audi A Murunga N Berkley JA Nokes DJ Munywoki PK
Pediatr Infect Dis J, (2025). 44:S114-S118

Characterising the asynchronous resurgence of common respiratory viruses following the COVID-19 pandemic.Zhao C Zhang T Guo L Sun S Miao Y Yung CF Tomlinson J Stolyarov K Shchomak Z Poovorawan Y Nokes DJ Munoz-Almagro C Mandelboim M Keck JW Langley JM Heikkinen T Deng J Colson P Chakhunashvili G Caballero MT Bont L Feikin DR Nair H Wang X Li Y Respiratory Virus Global Epidemiology Network
Nat Commun, (2025). 16:1610

Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data.Owuor DC Ngoi JM Nyasimi FM Murunga N Nyiro JU Chaves SS Nokes DJ Agoti CN
Sci Rep, (2024). 14:23426

Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014.Morobe JM Kamau E Luka MM Murunga N Lewa C Mutunga M Bigogo G Otieno N Nyawanda B Onyango C Nokes DJ Agoti CN Munywoki PK
Sci Rep, (2024). 14:22298

The cost of care for children hospitalized with respiratory syncytial virus (RSV) associated lower respiratory infection in Kenya.Nyiro JU Nyawanda BO Mutunga M Murunga N Nokes DJ Bigogo G Otieno NA Lidechi S Mazoya B Jit M Cohen C Moyes J Pecenka C Baral R Onyango C Munywoki PK Vodicka E
BMC Public Health, (2024). 24:2410

Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa.Owuor DC de Laurent ZR Oketch JW Murunga N Otieno JR Nabakooza G Chaves SS Nokes DJ Agoti CN
Sci Rep, (2024). 14:18987

Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019-2022.Lambisia AW Murunga N Mutunga M Cheruiyot R Maina G Makori TO Nokes DJ Agoti CN
Gut Pathog, (2024). 16:2

Changes in the global hospitalisation burden of respiratory syncytial virus in young children during the COVID-19 pandemic: a systematic analysis.Cong B Koc U Bandeira T Bassat Q Bont L Chakhunashvili G Cohen C Desnoyers C Hammitt LL Heikkinen T Huang QS Markic J Mira-Iglesias A Moyes J Nokes DJ Ploin D VRSstudy group in Lyon Seo E Singleton R Wolter N Fu Yung C Zar HJ Feikin DR Sparrow EG Respiratory Virus Global Epidemiology Network Nair H Li Y Promise investigators
Lancet Infect Dis, (2024). 24:361-374

Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons.Owuor DC de Laurent ZR Nyawanda BO Emukule GO Kondor R Barnes JR Nokes DJ Agoti CN Chaves SS
Sci Rep, (2023). 13:22342

Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households: A prospective cohort study.Gallagher KE Nyiro J Agoti CN Maitha E Nyagwange J Karani A Bottomley C Murunga N Githinji G Mutunga M Ochola-Oyier LI Kombe I Nyaguara A Kagucia EW Warimwe G Agweyu A Tsofa B Bejon P Scott JAG Nokes DJ
Influenza Other Respir Viruses, (2023). 17:e13185

New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March-May 2023.Mwanga MJ Lambisia AW Morobe JM Murunga N Moraa E Ndwiga L Cheruiyot R Musyoki J Mutunga M Guzman-Rincon LM Sande C Mwangangi J Bejon P Ochola-Oyier LI Nokes DJ Agoti CN Nyiro J Githinji G
Emerg Infect Dis, (2023). 29:2376-2379

Assessment of gestational age at antenatal care visits among Kenyan women to inform delivery of a maternal respiratory syncytial virus (RSV) vaccine in low- and middle-income countries.Nyiro JU Nyawanda BO Bukusi E Mureithi MW Murunga N Nokes DJ Bigogo G Otieno NA Opere VA Ouma A Pecenka C Munywoki PK
Wellcome Open Res, (2023). 8:154

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012-8.Makori TO Bargul JL Lambisia AW Mwanga MJ Murunga N de Laurent ZR Lewa CS Mutunga M Kellam P Cotten M Nokes DJ Phan M Agoti CN
Virus Evol, (2023). 9:vead025

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022).Lambisia AW Makori TO Mutunga M Cheruiyot R Murunga N Quick J Githinji G Nokes DJ Houldcroft CJ Agoti CN
Virus Evol, (2023). 9:vead023

Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains.Nabakooza G Owuor DC de Laurent ZR Galiwango R Owor N Kayiwa JT Jjingo D Agoti CN Nokes DJ Kateete DP Kitayimbwa JM Frost SDW Lutwama JJ
Sci Rep, (2023). 13:5516

Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa.Koltai M Moyes J Nyawanda B Nyiro J Munywoki PK Tempia S Li X Antillon M Bilcke J Flasche S Beutels P Nokes DJ Cohen C Jit M
BMC Med, (2023). 21:120

Estimates of the national burden of respiratory syncytial virus in Kenyan children aged under 5 years, 2010-2018.Nyawanda BO Murunga N Otieno NA Bigogo G Nyiro JU Vodicka E Bulterys M Nokes DJ Munywoki PK Emukule GO
BMC Med, (2023). 21:122