Publications

Biosciences

Incidence of chikungunya virus infections among Kenyan children with neurological disease, 2014-2018: A cohort study.Nyamwaya, D. K. Otiende, M. Mwango, L. Kariuki, S. M. Otieno, B. Omuoyo, D. O. Githinji, G. Kitsao, B. S. Karanja, H. K. Gitonga, J. N. de Laurent, Z. R. Davies, A. Mwarumba, S. Agoti, C. N. Thumbi, S. M. Hamaluba, M. M. Newton, C. R. Bejon, P. Warimwe, G. M.
PLoS Med, (2022). 19:e1003994

Transcriptomic signatures induced by the Ebola virus vaccine rVSVDeltaG-ZEBOV-GP in adult cohorts in Europe, Africa, and North America: a molecular biomarker study.Vianello, E. Gonzalez-Dias, P. van Veen, S. Engele, C. G. Quinten, E. Monath, T. P. Medaglini, D. Vsv-Ebovac Consortium Vsv-Eboplus Consortium Santoro, F. Huttner, A. Dubey, S. Eichberg, M. Ndungu, F. M. Kremsner, P. G. Essone, P. N. Agnandji, S. T. Siegrist, C. A. Nakaya, H. I. Ottenhoff, T. H. M. Haks, M. C.
Lancet Microbe, (2022). 3:e113-e123

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya.Nyagwange, J. Ndwiga, L. Muteru, K. Wamae, K. Tuju, J. Testing Team, C. Kutima, B. Gitonga, J. Karanja, H. Mugo, D. Kasera, K. Amoth, P. Murunga, N. Babu, L. Otieno, E. Githinji, G. Nokes, D. J. Tsofa, B. Orindi, B. Barasa, E. Warimwe, G. Agoti, C. N. Bejon, P. Ochola-Oyier, L. I.
Wellcome Open Res, (2022). 7:69

Cessation of exclusive breastfeeding and seasonality, but not small intestinal bacterial overgrowth, are associated with environmental enteric dysfunction: A birth cohort study amongst infants in rural Kenya.Crane, R. J. Parker, E. P. K. Fleming, S. Gwela, A. Gumbi, W. Ngoi, J. M. de Laurent, Z. R. Nyatichi, E. Ngari, M. Wambua, J. Uhlig, H. H. Berkley, J. A.
EClinicalMedicine, (2022). 47:101403

Ethical considerations around volunteer payments in a malaria human infection study in Kenya: an embedded empirical ethics study.Chi, P. C. Owino, E. A. Jao, I. Bejon, P. Kapulu, M. Marsh, V. Kamuya, D.
BMC Med Ethics, (2022). 23:46

Amplicon Sequencing as a Potential Surveillance Tool for Complexity of Infection and Drug Resistance Markers in Plasmodium falciparum Asymptomatic Infections.Wamae, K. Kimenyi, K. M. Osoti, V. de Laurent, Z. R. Ndwiga, L. Kharabora, O. Hathaway, N. J. Bailey, J. A. Juliano, J. J. Bejon, P. Ochola-Oyier, L. I.
J Infect Dis, (2022). 226:920-927

Long-lasting insecticide-treated net use and malaria infections on the Kenyan coast.Kamau, A. Musau, M. Mtanje, G. Mataza, C. Bejon, P. Snow, R. W.
Trans R Soc Trop Med Hyg, (2022). 116:966-970

Vitamin D Deficiency and Its Association with Iron Deficiency in African Children.Mogire, R. M. Muriuki, J. M. Morovat, A. Mentzer, A. J. Webb, E. L. Kimita, W. Ndungu, F. M. Macharia, A. W. Cutland, C. L. Sirima, S. B. Diarra, A. Tiono, A. B. Lule, S. A. Madhi, S. A. Prentice, A. M. Bejon, P. Pettifor, J. M. Elliott, A. M. Adeyemo, A. Williams, T. N. Atkinson, S. H.
Nutrients, (2022). 14:

TRUE-1: Trial of Repurposed Unithiol for snakebite Envenoming phase 1 (safety, tolerability, pharmacokinetics and pharmacodynamics in healthy Kenyan adults).Abouyannis, M. FitzGerald, R. Ngama, M. Mwangudzah, H. Nyambura, Y. K. Ngome, S. Riako, D. Babu, L. Lewa, F. Else, L. Dily Penchala, S. Orindi, B. Mumba, N. Kalama, B. Ndungu, F. M. Adetifa, I. Khoo, S. Lalloo, D. G. Casewell, N. R. Hamaluba, M.
Wellcome Open Res, (2022). 7:90

Plasmodium falciparum-Specific Memory B-Cell and Antibody Responses Are Associated With Immunity in Children Living in an Endemic Area of Kenya.Jahnmatz, P. Nyabundi, D. Sundling, C. Widman, L. Mwacharo, J. Musyoki, J. Otieno, E. Ahlborg, N. Bejon, P. Ndungu, F. M. Farnert, A.
Front Immunol, (2022). 13:799306

Clinical manifestations of Rift Valley fever in humans: Systematic review and meta-analysis.Anywaine, Z. Lule, S. A. Hansen, C. Warimwe, G. Elliott, A.
PLoS Negl Trop Dis, (2022). 16:e0010233

Targeted Amplicon Deep Sequencing for Monitoring Antimalarial Resistance Markers in Western Kenya.Osoti, V. Akinyi, M. Wamae, K. Kimenyi, K. M. de Laurent, Z. Ndwiga, L. Gichuki, P. Okoyo, C. Kepha, S. Mwandawiro, C. Kandie, R. Bejon, P. Snow, R. W. Ochola-Oyier, L. I.
Antimicrob Agents Chemother, (2022). 66:e0194521

Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol.Lambisia, A. W. Mohammed, K. S. Makori, T. O. Ndwiga, L. Mburu, M. W. Morobe, J. M. Moraa, E. O. Musyoki, J. Murunga, N. Mwangi, J. N. Nokes, D. J. Agoti, C. N. Ochola-Oyier, L. I. Githinji, G.
Front Med (Lausanne), (2022). 9:836728

Factors influencing health workers' compliance with outpatient malaria 'test and treat' guidelines during the plateauing performance phase in Kenya, 2014-2016.Amboko, B. Stepniewska, K. Machini, B. Bejon, P. Snow, R. W. Zurovac, D.
Malar J, (2022). 21:68

Ethics review of COVID-19 human challenge studies: A joint HRA/WHO workshop.Williams, E. Craig, K. Chiu, C. Davies, H. Ellis, S. Emerson, C. Jamrozik, E. Jefford, M. Kang, G. Kapulu, M. Kolstoe, S. E. Littler, K. Lockett, A. Elena, Rey Messer, J. McShane, H. Saenz, C. Selgelid, M. J. Shah, S. Smith, P. G. Yamazaki, N.
Vaccine, (2022). 40:3484-3489

Toll-Like Receptor-Induced Immune Responses During Early Childhood and Their Associations With Clinical Outcomes Following Acute Illness Among Infants in Sub-Saharan Africa.Uebelhoer, L. S. Gwela, A. Thiel, B. Nalukwago, S. Mukisa, J. Lwanga, C. Getonto, J. Nyatichi, E. Dena, G. Makazi, A. Mwaringa, S. Mupere, E. Berkley, J. A. Lancioni, C. L.
Front Immunol, (2022). 12:748996

10-year longitudinal study of malaria in children: Insights into acquisition and maintenance of naturally acquired immunity.Addy, J. W. G. Bediako, Y. Ndungu, F. M. Valetta, J. J. Reid, A. J. Mwacharo, J. Ngoi, J. M. Wambua, J. Otieno, E. Musyoki, J. Said, K. Berriman, M. Marsh, K. Bejon, P. Recker, M. Langhorne, J.
Wellcome Open Res, (2022). 6:79

Readiness of the Kenyan public health sector to provide pre-referral care for severe paediatric malaria.Amboko, B. Machini, B. Githuka, G. Bejon, P. Zurovac, D. Snow, R. W.
Trop Med Int Health, (2022). 27:330-336

Malaria hospitalisation in East Africa: age, phenotype and transmission intensity.Kamau, A. Paton, R. S. Akech, S. Mpimbaza, A. Khazenzi, C. Ogero, M. Mumo, E. Alegana, V. A. Agweyu, A. Mturi, N. Mohammed, S. Bigogo, G. Audi, A. Kapisi, J. Sserwanga, A. Namuganga, J. F. Kariuki, S. Otieno, N. A. Nyawanda, B. O. Olotu, A. Salim, N. Athuman, T. Abdulla, S. Mohamed, A. F. Mtove, G. Reyburn, H. Gupta, S. Lourenco, J. Bejon, P. Snow, R. W.
BMC Med, (2022). 20:28

Distinct kinetics of antibodies to 111 Plasmodium falciparum proteins identifies markers of recent malaria exposure.Yman, V. Tuju, J. White, M. T. Kamuyu, G. Mwai, K. Kibinge, N. Asghar, M. Sundling, C. Sonden, K. Murungi, L. Kiboi, D. Kimathi, R. Chege, T. Chepsat, E. Kiyuka, P. Nyamako, L. Osier, F. H. A. Farnert, A.
Nat Commun, (2022). 13:331