Coxsackievirus A24 variant whole genome sequencing from clinical samples using a three overlapping amplicons strategy.Morobe, J. M. Odoyo, S. Lambisia, A. W. Moraa, E. Houldcroft, C. J. Holmes, E. C. Githinji, G. Agoti, C. N.
Wellcome Open Res, (2025). 10:316

GRAPEVNE - Graphical Analytical Pipeline Development Environment for Infectious Diseases.Brittain, J. S. Tsui, J. Inward, R. Gutierrez, B. Mwanyika, G. Tegally, H. Huynh, T. Githinji, G. Tessema, S. K. McCrone, J. T. Bhatt, S. Dasgupta, A. Ratcliffe, S. Kraemer, M. U. G.
Wellcome Open Res, (2025). 10:279

Identification of coxsackievirus A24 variant during an acute hemorrhagic conjunctivitis outbreak in coastal Kenya, 2024.Lambisia, A. W. Mwita Morobe, J. Moraa, E. Mwarumba, S. Korir, F. K. N. Seif Athman, R. Kiptui, R. Mbee, M. Mugo, N. Amoth, P. Muange, P. J. Houldcroft C Barasa, E. Mwangangi, J. Githinji, G. C. Holmes E Ochola-Oyier, L. I. Agoti, C. N.
Wellcome Open Res, (2025). 10:28

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya.Nyagwange, J. Ndwiga, L. Muteru, K. Wamae, K. Tuju, J. Testing Team, C. Kutima, B. Gitonga, J. Karanja, H. Mugo, D. Kasera, K. Amoth, P. Murunga, N. Babu, L. Otieno, E. Githinji, G. Nokes, D. J. Tsofa, B. Orindi, B. Barasa, E. Warimwe, G. Agoti, C. N. Bejon, P. Ochola-Oyier, L. I.
Wellcome Open Res, (2022). 7:69

Evaluating the performance of tools used to call minority variants from whole genome short-read data.Said Mohammed, K. Kibinge, N. Prins, P. Agoti, C. N. Cotten, M. Nokes, D. J. Brand, S. Githinji, G.
Wellcome Open Res, (2018). 3:21

A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections.Githinji, G. Bull, P. C.
Wellcome Open Res, (2017). 2:86