Nokes DJ

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17.Kamau E, Otieno JR, Murunga N, Oketch JW, Ngoi JM, de Laurent ZR, Mwema A, Nyiro JU, Agoti CN, Nokes DJ
Virus Evol, (2020). 6:veaa050

Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.Mwanga MJ, Owor BE, Ochieng JB, Ngama MH, Ogwel B, Onyango C, Juma J, Njeru R, Gicheru E, Otieno GP, Khagayi S, Agoti CN, Bigogo GM, Omore R, Addo OY, Mapaseka S, Tate JE, Parashar UD, Hunsperger E, Verani JR, Breiman RF, Nokes DJ
BMC Infect Dis, (2020). 20:504

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.Abidha CA, Nyiro J, Kamau E, Abdullahi O, Nokes DJ, Agoti CN
Virus Evol, (2020). 6:veaa031

Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households.Brand SP, Munywoki P, Walumbe D, Keeling MJ, Nokes DJ
Elife, (2020). 9:e47003

Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting.Kinyanjui T, Pan-Ngum W, Saralamba S, Taylor S, White L, Nokes DJ
Vaccine X, (2020). 4:100055

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M
BMC Genomics, (2020). 21:83

Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017.Owuor DC, Ngoi JM, Otieno JR, Otieno GP, Nyasimi FM, Nyiro JU, Agoti CN, Chaves SS, Nokes DJ
Influenza Other Respir Viruses, (2020). 14:320-330

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau E, Oketch JW, de Laurent ZR, Phan MVT, Agoti CN, Nokes DJ, Cotten M
BMC Genomics, (2020). 21:5

Impact of the Introduction of Rotavirus Vaccine on Hospital Admissions for Diarrhea Among Children in Kenya: A Controlled Interrupted Time-Series Analysis.Otieno GP, Bottomley C, Khagayi S, Adetifa I, Ngama M, Omore R, Ogwel B, Owor BE, Bigogo G, Ochieng JB, Onyango C, Juma J, Mwenda J, Tabu C, Tate JE, Addo Y, Britton T, Parashar UD, Breiman RF, Verani JR, Nokes DJ
Clin Infect Dis, (2020). 70:2306-2313

Effectiveness of Monovalent Rotavirus Vaccine Against Hospitalization With Acute Rotavirus Gastroenteritis in Kenyan Children.Khagayi S, Omore R, Otieno GP, Ogwel B, Ochieng JB, Juma J, Apondi E, Bigogo G, Onyango C, Ngama M, Njeru R, Owor BE, Mwanga MJ, Addo Y, Tabu C, Amwayi A, Mwenda JM, Tate JE, Parashar UD, Breiman RF, Nokes DJ, Verani JR
Clin Infect Dis, (2020). 70:2298-2305

Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya.Kamau E, Luka MM, de Laurent ZR, Adema I, Agoti CN, Nokes DJ
Microbiol Resour Announc, (2019). 8:

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors.Kiti MC, Melegaro A, Cattuto C, Nokes DJ
Wellcome Open Res, (2019). 4:84

Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016.Oketch JW, Kamau E, Otieno GP, Otieno JR, Agoti CN, Nokes DJ
BMC Infect Dis, (2019). 19:757

Author Correction: Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande CJ, Njunge JM, Ngoi JM, Mutunga MN, Chege T, Gicheru ET, Gardiner EM, Gwela A, Green CA, Drysdale SB, Berkley JA, Nokes DJ, Pollard AJ
Nat Commun, (2019). 10:3291

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ
Sci Rep, (2019). 9:10076

Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande CJ, Njunge JM, Mwongeli Ngoi J, Mutunga MN, Chege T, Gicheru ET, Gardiner EM, Gwela A, Green CA, Drysdale SB, Berkley JA, Nokes DJ, Pollard AJ
Nat Commun, (2019). 10:2218

Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya.Nyiro JU, Kiyuka PK, Mutunga MN, Sande CJ, Munywoki PK, Scott JAG, Nokes DJ
Wellcome Open Res, (2019). 4:33

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.Kamau E, Agoti CN, Ngoi JM, de Laurent ZR, Gitonga J, Cotten M, Phan MVT, Nokes DJ, Delwart E, Sanders E, Warimwe GM
Microbiol Resour Announc, (2019). 8:

Model-based estimates of transmission of respiratory syncytial virus within households.Kombe IK, Munywoki PK, Baguelin M, Nokes DJ, Medley GF
Epidemics, (2019). 27:1-11

An Intensive, Active Surveillance Reveals Continuous Invasion and High Diversity of Rhinovirus in Households.Kamau E, Onyango CO, Otieno GP, Kiyuka PK, Agoti CN, Medley GF, Cane PA, Nokes DJ, Munywoki PK
J Infect Dis, (2019). 219:1049-1057