Publications

allpublications60

The Etiology of Pneumonia in HIV-uninfected Children in Kilifi, Kenya: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study
Awori JO, Kamau A, Morpeth S, Kazungu S, Silaba M, Sande J, Karani A, Nyongesa S, Mwarumba S, Musyimi R, Bett A, Wande S, Shebe M, Ngama M, Munywoki PK, Muturi N, Nokes DJ, Feikin DR, Murdoch DR, Prosperi C, O'Brien KL, Deloria Knoll M, Hammitt LL, Scott JAG.
Pediatr Infect Dis J. 2021 Sep 1;40(9S):S29-S39. doi: 10.1097/INF.0000000000002653.

Introduction to the Site-specific Etiologic Results From the Pneumonia Etiology Research for Child Health (PERCH) Study
Deloria Knoll M, Prosperi C, Baggett HC, Brooks WA, Feikin DR, Hammitt LL, Howie SRC, Kotloff KL, Madhi SA, Murdoch DR, Scott JAG, Thea DM, O'Brien KL.
Pediatr Infect Dis J. 2021 Sep 1;40(9S):S1-S6. doi: 10.1097/INF.0000000000002778.

Pulse oximetry adoption and oxygen orders at paediatric admission over 7 years in Kenya: a multihospital retrospective cohort study
Tuti T, Aluvaala J, Akech S, Agweyu A, Irimu G, English M, Clinical Information Network Author Group.
BMJ Open. 2021 Sep 7;11(9):e050995. doi: 10.1136/bmjopen-2021-050995.

A Stronger Innate Immune Response During Hyperacute Human Immunodeficiency Virus Type 1 (HIV-1) Infection Is Associated With Acute Retroviral Syndrome
Hassan AS, Hare J, Gounder K, Nazziwa J, Karlson S, Olsson L, Streatfield C, Kamali A, Karita E, Kilembe W, Price MA, Borrow P, Björkman P, Kaleebu P, Allen S, Hunter E, Ndung'u T, Gilmour J, Rowland-Jones S, Esbjörnsson J, Sanders EJ.
Clin Infect Dis. 2021 Sep 7;73(5):832-841. doi: 10.1093/cid/ciab139.

The ethical implications of verbal autopsy: responding to emotional and moral distress
Hinga A, Marsh V, Nyaguara A, Wamukoya M, Molyneux S.
BMC Med Ethics. 2021 Sep 4;22(1):118. doi: 10.1186/s12910-021-00683-7.

Prevalence of SARS-CoV-2 Antibodies From a National Serosurveillance of Kenyan Blood Donors, January-March 2021
Uyoga S, Adetifa IMO, Otiende M, Yegon C, Agweyu A, Warimwe GM, Scott JAG.
JAMA. 2021 Oct 12;326(14):1436-1438. doi: 10.1001/jama.2021.15265.

High seroprevalence of SARS-CoV-2 but low infection fatality ratio eight months after introduction in Nairobi, Kenya
Ngere I, Dawa J, Hunsperger E, Otieno N, Masika M, Amoth P, Makayotto L, Nasimiyu C, Gunn BM, Nyawanda B, Oluga O, Ngunu C, Mirieri H, Gachohi J, Marwanga D, Munywoki PK, Odhiambo D, Alando MD, Breiman RF, Anzala O, Njenga MK, Bulterys M, Herman-Roloff A, Osoro E.
Int J Infect Dis. 2021 Nov;112:25-34. doi: 10.1016/j.ijid.2021.08.062. Epub 2021 Sep 2.

Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018
Luka MM, Kamau E, de Laurent ZR, Morobe JM, Alii LK, Nokes DJ, Agoti CN.
Wellcome Open Res. 2021 Sep 23;6:178. doi: 10.12688/wellcomeopenres.16911.2. eCollection 2021.

Point-of-care tests detecting HIV nucleic acids for diagnosis of HIV-1 or HIV-2 infection in infants and children aged 18 months or less
Ochodo EA, Guleid F, Deeks JJ, Mallett S.
Cochrane Database Syst Rev. 2021 Aug 12;8(8):CD013207. doi: 10.1002/14651858.CD013207.pub2.

Information asymmetry in the Kenyan medical laboratory sector
Bahati F, English M, Sayed S, Horton S, Odhiambo OA, Samatar AA, McKnight J.
Glob Health Action. 2021 Jan 1;14(1):1964172. doi: 10.1080/16549716.2021.1964172.

The 20-minute whole blood clotting test (20WBCT) for snakebite coagulopathy-A systematic review and meta-analysis of diagnostic test accuracy
Lamb T, Abouyannis M, de Oliveira SS, Shenoy K R, Geevar T, Zachariah A, Sharma SK, Bhatt N, Mukaka M, Harriss E, Lalloo DG, Ashley EA, Monteiro WM, Smithuis F, Eddleston M.
PLoS Negl Trop Dis. 2021 Aug 10;15(8):e0009657. doi: 10.1371/journal.pntd.0009657. eCollection 2021

Global disparities in SARS-CoV-2 genomic surveillance
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C, Danish Covid-19 Genome Consortium, COVID-19 Impact Project, Network for Genomic Surveillance in South Africa (NGS-SA), GISAID core curation team, Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR.
medRxiv. 2021 Dec 9:2021.08.21.21262393. doi: 10.1101/2021.08.21.21262393. Preprint.

Assessing the Level and Determinants of COVID-19 Vaccine Confidence in Kenya
Orangi S, Pinchoff J, Mwanga D, Abuya T, Hamaluba M, Warimwe G, Austrian K, Barasa E.
Vaccines (Basel). 2021 Aug 23;9(8):936. doi: 10.3390/vaccines9080936.

Insecticide-treated net distribution in Western Kenya: impacts related to COVID-19 and health worker strikes
Suiyanka L, Alegana VA, Snow RW.
Int Health. 2021 Aug 16:ihab051. doi: 10.1093/inthealth/ihab051. Online ahead of print.

Adherence to iron and folic acid supplementation during pregnancy among postnatal mothers seeking maternal and child healthcare at Kakamega level 5 hospital in Kenya: a cross-sectional study
Bahati F, Kairu-Wanyoike S, Nzioki JM.
Wellcome Open Res. 2021 Jul 5;6:80. doi: 10.12688/wellcomeopenres.16699.2. eCollection 2021.

Clinical outcomes and outcome measurement tools reported in randomised controlled trials of treatment for snakebite envenoming: A systematic review
Abouyannis M, Aggarwal D, Lalloo DG, Casewell NR, Hamaluba M, Esmail H.
PLoS Negl Trop Dis. 2021 Aug 2;15(8):e0009589. doi: 10.1371/journal.pntd.0009589. eCollection 2021 A

An innovative leadership development initiative to support building everyday resilience in health systems
Nzinga J, Boga M, Kagwanja N, Waithaka D, Barasa E, Tsofa B, Gilson L, Molyneux S.
Health Policy Plan. 2021 Aug 12;36(7):1023-1035. doi: 10.1093/heapol/czab056.

Horizontal Transmission of the Symbiont Microsporidia MB in Anopheles arabiensis
Nattoh G, Maina T, Makhulu EE, Mbaisi L, Mararo E, Otieno FG, Bukhari T, Onchuru TO, Teal E, Paredes J, Bargul JL, Mburu DM, Onyango EA, Magoma G, Sinkins SP, Herren JK.
Front Microbiol. 2021 Jul 28;12:647183. doi: 10.3389/fmicb.2021.647183. eCollection 2021.

Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
Githinji G, de Laurent ZR, Mohammed KS, Omuoyo DO, Macharia PM, Morobe JM, Otieno E, Kinyanjui SM, Agweyu A, Maitha E, Kitole B, Suleiman T, Mwakinangu M, Nyambu J, Otieno J, Salim B, Kasera K, Kiiru J, Aman R, Barasa E, Warimwe G, Bejon P, Tsofa B, Ochola-Oyier LI, Nokes DJ, Agoti CN.
Nat Commun. 2021 Aug 10;12(1):4809. doi: 10.1038/s41467-021-25137-x.

Equity for excellence in academic institutions: a manifesto for change
Wedekind L, Noé A, Mokaya J, Tamandjou C, Kapulu M, Ruecker A, Kestelyn E, Zimba M, Khatamzas E, Eziefula AC, Mackintosh CL, Nascimento R, Ariana P, Best D, Gibbs E, Dunachie S, Hadley G, Ravenswood H, Young B, Kamau C, Marsh K, McShane H, Hale R, McPhilbin E, Ovseiko PV, Oxford Equity in Academia consortium, Surender R, Worland C, White LJ, Matthews PC.
Wellcome Open Res. 2021 Jun 7;6:142. doi: 10.12688/wellcomeopenres.16861.1. eCollection 2021.
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